PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010353m
Common NameEUTSA_v10010353mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 465aa    MW: 48725.2 Da    PI: 10.2729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010353mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-056183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Thhalv10010353m 61 FVCEICSKGFQRDQNLQLHRRGH 83
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-66083No hitNo description
Gene3DG3DSA:3.30.160.605.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8876183IPR007087Zinc finger, C2H2
SMARTSM003550.0366183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355270102132IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.21E-6132157No hitNo description
SMARTSM00355190137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQNPLLKSS GKKKRNLPGM PDPESEVIAL SPKTLLATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QKSSKEVRKK VYVCPEISCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVVS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARSHNNPS KKQNPVVLPR KKPVPDPKSV AAANSPSSPN LAPVDTQSAK  240
IKSPPIKRSE SPKTPPETLQ EAPKPTGLNV TRNGVFAGLF ESSSASPSIY TSSSSSSSSS  300
QSLFAPSSSI EPISLGLSTS HGSSFLGSTR FPTQPAMSAT ALLQKAAQMG ATSSGGSLLR  360
GLGIVSSSSP SMDSIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT TLDFLGLGRA  420
VGNGGGGPGN GLSALVGGTG GVDVAAAFGS GEFSVKDIGR RTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQKSSKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404010.10.0hypothetical protein EUTSA_v10010353mg
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLE4MXG30.0E4MXG3_EUTHA; mRNA, clone: RTFL01-27-D18
TrEMBLV4LZV90.0V4LZV9_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.5__1410__AT3G50700.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2